Engineering the World
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Recipe: IBM FHIR Server – Using Bulk Data with the Azure Blob Service
The IBM FHIR Server has support for exporting and importing Bulk Data using extended operations for Bulk Data $import, $export and $bulkdata-status, which are implemented as Java Maven projects. The IBM FHIR Server uses JSR252 JavaBatch jobs running in the Open Liberty Java Batch Framework. The IBM FHIR Server supports storage providers S3 (aws-s3,ibm-cos), File…
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IBM FHIR Server – Debug Drop Tablespace
I’ve been debugging a drop tablespace issue on Db2 – IBM/FHIR: 2354. The core issue was a timing problem with lots of partitions dettaching. This adds a delay to the dropTablespace so the async operation can complete, and cleanly exit with a specific error code so downstream consumers can work around the issue.
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IBM FHIR Server – Debugging Tips
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BulkData: rclone with S3
This was super helpful for debugging S3 files/folders.
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GitHub Actions: Paging file is too small
If you hit this issue, per the GitHub community it’s a Windows issue that can be worked around with a Pagefile. link [ERROR] OpenJDK 64-Bit Server VM warning: INFO: os::commit_memory(0x0000000700000000, 553648128, 0) failed; error=’The paging file is too small for this operation to complete’ (DOS error/errno=1455)
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Some examples of FHIR Path
Here are some examples I generated from a demo with the IBM FHIR Server
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Let’s Go: Start-to-End with the IBM FHIR Server and Bulk Data
In IBM FHIR Server 4.6.0, IBM FHIR Server has refactored the supported Bulk Data operations that support the HL7 FHIR BulkDataAccess IG: STU1 and the Proposal for $import Operation. To demonstrate the new features in a quick script, use the following to setup an S3 demonstration from the start-to-end. Setup Minio Setup IBM FHIR Server…
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Question: How to setup the IBM FHIR Server with fhir-audit?
The IBM FHIR Server supports audit events for FHIR operations (CREATE-READ-UPDATE-DELETE-OPERATION) in Cloud Auditing Data Federation (CADF) and HL7 FHIR AuditEvent and pushing the events to an Apache Kafka backend. You can read more about it on the IBM FHIR Server site. Let’s spin up an IBM FHIR Server with fhir-audit and see what we…
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Question: How to use fhir-path-cli?
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Question: How to use IBM FHIR Server Notifications with IBM Cloud Functions?
A question I had recently was “How to use IBM FHIR Server” with IBM Cloud Functions…. Here is the recipe: